Computing inbreeding coefficients and the inverse numerator relationship matrix in large populations of honey bees          下载免费PDF全文

Richard Bernstein  Manuel Plate  Andreas Hoppe  Kaspar Bienefeld 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2018,135(4):323-332

The inbreeding coefficients are considered in breeding decisions, and the inverse numerator relationship matrix A ^?1 is a prerequisite for breeding value estimation. Polyandry and haploid males are among the specifics of relationships between honey bees. Brascamp and Bijma (2014) averaged out the manifold possible relationships among honey bees that appear to have the same parents in a pedigree and assigned a single entry in A to animals that behave as a unit, for example, the workers of a hive. Their methods of calculation connected full‐sibs in the variance matrix of the Mendelian sampling terms D , via nonzero off‐diagonal elements. This impedes the inversion of A and the closely connected calculation of inbreeding coefficients, because efficient algorithms for this task take D to be a diagonal matrix. Memory limitations necessitate their use for large data sets. We adapted the quickest of them to the block diagonal matrix D , that is postulated for the honey bee. To our knowledge, the presented algorithm is the first one that facilitates the method of Brascamp and Bijma (2014) on large data sets.  相似文献   

Town ecology: for the land of towns and villages     

Forman  Richard T. T. 《Landscape Ecology》2019,34(10):2209-2211

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Spatial relationship between biodiversity and geodiversity across a gradient of land-use intensity in high-latitude landscapes     

Helena Tukiainen  Janne Alahuhta  Richard Field  Terhi Ala-Hulkko  Raino Lampinen  Jan Hjort 《Landscape Ecology》2017,32(5):1049-1063

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Short-term effects of aglime on inorganic- and organic-derived CO2 emissions from two acid soils amended with an ammonium-based fertiliser     

Bramble  De Shorn E.  Gouveia  Gregory A.  Ramnarine  Ravindra  Farrell  Richard E. 《Journal of Soils and Sediments》2020,20(1):52-65

Purpose

Aglime application can promote carbon dioxide (CO₂) emissions from acid soils. However, the controlling mechanisms are still poorly understood, particularly the role of fertiliser-ammonium oxidation. This study therefore assessed the effects of aglime on soil inorganic C (SIC)– and soil organic C (SOC)–derived CO₂ emissions from acid soils amended with ammonium.

Materials and methods

Ammonium at three N rates [0% (A0), 0.005% (A1), and 0.2% (A2) w/w] and labelled aglime (Ca¹³CO_3,¹³C 5.94% aa) at three rates [0% (L1), 0.067% (L1), and 0.392% (L2) w/w] were applied to two contrasting acid soils (Nariva series, Mollic Fluvaquents; and Piarco series, Typic Kanhaplaquults) and incubated in 1-l media bottles for 23 days. A calcareous soil (Princes Town series, Aquentic Eutrudepts, carbonate δ¹³C of ??4.79‰) was included as a control that only received ammonium at the three rates.

Results and discussion

The application of ammonium at the A2 rate significantly (p?<?0.05) increased cumulative SIC-CO₂ emissions by 15.8 and 27.1% in comparison to the A0 rate for the Nariva and Piarco soils, respectively, when they were limed at the L2 rate. The lower rate of ammonium (A1), however, had no effect on these emissions, which suggests that enough acidity may not have been generated at this rate to significantly enhance the release of SIC-CO₂. Furthermore, no effect of ammonium rates was observed on SIC-CO₂ emissions from the calcareous soil, which refutes the hypothesis that this amendment plays a greater role in regulating these emissions from calcareous soils compared with acid soils. Also, in contradiction to another hypothesis, the aglime-induced priming effect on SOC decomposition was more apparent in the low-C Piarco soil. This effect was also significantly (p?<?0.05) greater at the L2 rate (above the lime requirement for Piarco), which demonstrates the negative impact that over-liming could have on the sequestration of C in this soil. Our results also showed that ammonium addition may also help to reduce the magnitude of the aglime-induced priming effect in the Piarco soil when it is not over-limed.

Conclusions

Overall, the findings of this study suggest that ammonium fertiliser broadcast at conventional rates may not serve as a significant regulator of SIC-CO₂ emissions from highly to moderately acidic soils amended with aglime. Our findings also indicate a need to consider nitrogen management as an important factor regulating the effects of aglime on SOC-CO₂ emissions.

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Identification and Functional Analysis of Bet v 1 in Three D Genome-containing Wild Cotton Varieties     

Dong Qi  Magwanga Richard Odongo  Lu Pu  Cai Xiaoyan  Zhou Zhongli  Wang Xingfen  Wang Xingxing  Xu Yanchao  Hou Yuqing  Wang Yanqing  Wang Kunbo  Liu Fang  Ma Zhiying 《棉花学报》2019,31(5):361-380

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Retraction to “Influence of postharvest treatments on visual appearance, sensory analysis and aroma volatile compounds of ‘Mauritius’ litchi fruit during storage” [Postharvest Biol. Technol. 57 (3) (2010) 155-161]     

Elize HanekomDharini Sivakumar  Yvette NaudéEgmont Richard Rohwer  Lise Korsten 《Postharvest Biology and Technology》2011,62(2):221

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Projecting future habitat quality of three midwestern reservoir fishes under warming conditions     

Richard R. Budnik  Joseph D. Conroy  Richard D. Zweifel  Stuart A. Ludsin  Elizabeth A. Marschall 《Ecology of Freshwater Fish》2021,30(1):31-47

Rising temperatures caused by climate change are likely to affect cool‐water and warm‐water fishes differently. Yet, forecasts of anticipated temperature effects on fishes of different thermal guilds are lacking, especially in freshwater ecosystems. Towards this end, we used spatially explicit, growth rate potential (GRP) models to project changes in seasonal habitat quality for a warm‐water piscivore (largemouth bass Micropterus salmoides), a cool‐water piscivore (walleye Sander vitreus) and a hybrid piscivore (saugeye S. vitreus × S. canadensis) in two Midwestern reservoirs. We assessed habitat quality for two periods (early and middle 21st century) under two realistic greenhouse gas emission scenarios (a mid‐century emissions peak and a rapid continuous increase in emissions). Largemouth bass were projected to experience enhanced or slightly reduced habitat during all seasons, and throughout the mid‐21st century. By contrast, walleye habitat was projected to decline with anticipated warming, except during the spring in the smaller of our two study reservoirs and during the fall in the larger of our two study reservoirs. Saugeye habitat was projected to either increase modestly or decline slightly during the spring and fall and declines in habitat quality and quantity that were smaller than those for walleye were identified during summer. Collectively, our findings indicate that climate warming will differentially alter habitat suitability for reservoir piscivores, favouring warm‐water species over cool‐water species. We expect these changes in habitat quality to impact the dynamics of reservoir fish populations to varying degrees necessitating the consideration of climate when making future management decisions.  相似文献   

Antimicrobial resistance and recovery of Salmonella,Campylobacter, and Escherichia coli from chicken egg layer flocks in Canadian sentinel surveillance sites using 2 types of sample matrices     

Agnes Agunos  Sheryl P. Gow  David F. Lger  Logan Flockhart  Danielle Daignault  Andrea Desruisseau  Erin Zabek  Frank Pollari  Richard J. Reid-Smith 《Canadian journal of veterinary research》2021,85(1):27

Eggs are important to the diet of Canadians. This product is one of the supply-managed commodities in Canada, but unlike other commodities, where food safety risks are extensively explored and reported, information on the prevalence of enteric organisms (e.g., Salmonella, Campylobacter) and antimicrobial resistance (AMR) in layers in Canada are limited. This study was conducted to determine the prevalence of select bacteria and the associated AMR patterns in layer flocks using 2 sample matrices. Farms were located within FoodNet Canada and the Canadian Integrated Program for Antimicrobial Resistance Surveillance sentinel sites (SS). Fecal samples (Ontario: ON_SS1a, ON_SS1b) and environmental sponge swabs (British Columbia: BC_SS2a) were collected. Salmonella prevalence was 29% and 8% in ON_SS1a and ON_SS1b, respectively, and 7% in BC_SS2a. S. Kentucky and S. Livingstone were the most frequently isolated serovars and no S. Enteritidis was detected. Campylobacter was not detected in the BC sponge swabs but was isolated from 89% and 53% of Ontario fecal samples (ON_SS1a and ON_SS1b, respectively). Seven C. jejuni from Ontario were ciprofloxacin-resistant. Escherichia coli prevalence was high in both sample types (98%). Overall, tetracycline resistance among E. coli ranged from 26% to 69%. Resistance to ceftiofur (n = 2 isolates) and gentamicin (n = 2) was relatively low. There were diverse resistance patterns (excludes susceptible isolates) observed among E. coli in Ontario (10 patterns) and British Columbia (14 patterns). This study revealed that fecal samples are more informative for farm-level monitoring of pathogen and AMR prevalence. Without further validation, sponge swabs are limited in their utility for Campylobacter detection and thus, for public health surveillance.  相似文献   

Ocular teratoid medulloepithelioma in a northern red-shouldered macaw: case report and literature review     

Jeann Leal de Araújo  Alice C. A. M. Arruda  Nayadjala T. A. Santos  Glenison F. Dias  Thiago F. L. Nery  Fabio Del Piero  Richard Ploeg  Brian F. Porter  Ingeborg M. Langohr 《Journal of veterinary diagnostic investigation》2021,33(3):600

A 4-mo-old northern red-shouldered macaw (Diopsittaca nobilis) was admitted to the veterinary hospital of the Arruda Câmara Zoo, in the State of Paraiba, Brazil, for investigation of an orbital mass. Given rapid progression and lack of response to treatment, the bird was euthanized, and an autopsy was performed. Histologically, the mass consisted of a retrobulbar invasive tumor characterized by tubular and rosette-like structures, with interspersed heteroplastic tissues, such as aggregates of neuroglial cells and islands of hyaline cartilage. The tumor was immunopositive for pancytokeratin, GFAP, NSE, and S100. These findings were compatible with an ocular teratoid medulloepithelioma, a neoplasm best described in humans but also reported rarely in young cockatiels and African Grey parrots.  相似文献   

Grasses and Grazers of Botswana and the Surrounding Savanna     

Richard Fynn 《African Journal of Range and Forage Science》2016,33(2):138-139

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